Skip to content

To

Bases: Transform

Move all data to a device and/or cast to a dtype.

Wraps the to() method as a transform so it can be used inside Compose pipelines.

Parameters:

Name Type Description Default
*to_args Any

Positional arguments forwarded to torch.Tensor.to(). Typically a device string ("cpu", "cuda", "mps") or a torch.dtype (torch.float16).

()
**to_kwargs Any

Keyword arguments forwarded to torch.Tensor.to().

{}

Examples:

>>> import torchio as tio
>>> transform = tio.To(torch.float16)
>>> transform = tio.To("cuda")
>>> pipeline = tio.Compose([
...     tio.To("cuda"),
...     tio.Noise(std=0.1),
... ])
Source code in src/torchio/transforms/to.py
class To(Transform):
    """Move all data to a device and/or cast to a dtype.

    Wraps the `to()` method as a transform so it can be used inside
    [`Compose`][torchio.Compose] pipelines.

    Args:
        *to_args: Positional arguments forwarded to
            [`torch.Tensor.to()`](https://pytorch.org/docs/stable/generated/torch.Tensor.to.html).
            Typically a device string (`"cpu"`, `"cuda"`,
            `"mps"`) or a `torch.dtype` (`torch.float16`).
        **to_kwargs: Keyword arguments forwarded to
            `torch.Tensor.to()`.

    Examples:
        >>> import torchio as tio
        >>> transform = tio.To(torch.float16)
        >>> transform = tio.To("cuda")
        >>> pipeline = tio.Compose([
        ...     tio.To("cuda"),
        ...     tio.Noise(std=0.1),
        ... ])
    """

    def __init__(self, *to_args: Any, **to_kwargs: Any) -> None:
        super().__init__()
        self.to_args = to_args
        self.to_kwargs = to_kwargs

    def make_params(self, batch: SubjectsBatch) -> dict[str, Any]:
        return {"to_args": self.to_args, "to_kwargs": self.to_kwargs}

    def apply_transform(
        self,
        batch: SubjectsBatch,
        params: dict[str, Any],
    ) -> SubjectsBatch:
        batch.to(*params["to_args"], **params["to_kwargs"])
        return batch

supports_per_instance_params property

Whether this transform can sample parameters per batch element.

Defaults to False. Transforms that implement per-instance parameter sampling override this to return True. When False, the transform always uses batch-shared parameters regardless of the per_instance flag, preserving the legacy behavior.

supports_per_instance_p property

Whether this transform can gate each batch element independently.

Defaults to False. Shape-preserving transforms that implement per-element probability override this to return True. Shape-changing transforms must leave it False because masked and unmasked elements would have incompatible shapes.

invertible property

Whether this transform can be inverted.

forward(data)

forward(data: Subject) -> Subject
forward(data: Image) -> Image
forward(data: Tensor) -> Tensor
forward(data: np.ndarray) -> np.ndarray
forward(data: sitk.Image) -> sitk.Image
forward(data: nib.Nifti1Image) -> nib.Nifti1Image
forward(data: dict) -> dict
forward(data: ImagesBatch) -> ImagesBatch
forward(data: SubjectsBatch) -> SubjectsBatch

Apply the transform.

The output type always matches the input type.

Parameters:

Name Type Description Default
data Any

Input data to transform.

required
Source code in src/torchio/transforms/transform.py
def forward(self, data: Any) -> Any:
    """Apply the transform.

    The output type always matches the input type.

    Args:
        data: Input data to transform.
    """
    if self.copy:
        data = _copy.deepcopy(data)
    batch, unwrap = self._wrap(data)
    # When per-element gating is active, the transform handles the
    # probability itself (masked-out elements get identity params),
    # so skip the batch-wide coin flip here. Apply iff rand < p, so
    # p=0 is always a no-op and p=1 always applies.
    if not self._per_instance_p_active(batch) and torch.rand(1).item() >= self.p:
        return unwrap(batch)
    params = self.make_params(batch)
    batch = self.apply_transform(batch, params)
    # Record history on the batch, unless every element was gated out by
    # per-element probability: that is an exact no-op, and recording it
    # would let history replay (e.g. an invertible spatial transform)
    # trigger an unnecessary identity resample.
    if not _all_elements_gated_out(params):
        trace = AppliedTransform(name=type(self).__name__, params=params)
        if not hasattr(batch, "applied_transforms"):
            batch.applied_transforms = []
        batch.applied_transforms.append(trace)
    result = unwrap(batch)
    # Propagate history to outputs that can carry it
    if (
        hasattr(batch, "applied_transforms")
        and not isinstance(result, (SubjectsBatch, Tensor, np.ndarray))
        and not isinstance(result, dict)
    ):
        with contextlib.suppress(AttributeError):
            result.applied_transforms = list(batch.applied_transforms)
    return result

inverse(params)

Return a transform that undoes this one.

Override in invertible subclasses. The returned transform, when applied, reverses the effect of the forward pass with the given parameters.

Parameters:

Name Type Description Default
params dict[str, Any]

The parameters recorded in the forward pass.

required

Returns:

Type Description
Transform

A new Transform instance that inverts this one.

Source code in src/torchio/transforms/transform.py
def inverse(self, params: dict[str, Any]) -> Transform:
    """Return a transform that undoes this one.

    Override in invertible subclasses. The returned transform,
    when applied, reverses the effect of the forward pass with
    the given parameters.

    Args:
        params: The parameters recorded in the forward pass.

    Returns:
        A new `Transform` instance that inverts this one.
    """
    msg = f"{type(self).__name__} is not invertible"
    raise NotImplementedError(msg)

to_hydra()

Export as a Hydra-compatible config dict.

Returns a dict with _target_ set to the fully qualified class name and only non-default field values included.

Returns:

Type Description
dict[str, Any]

Dict suitable for hydra.utils.instantiate().

Source code in src/torchio/transforms/transform.py
def to_hydra(self) -> dict[str, Any]:
    """Export as a Hydra-compatible config dict.

    Returns a dict with `_target_` set to the fully qualified
    class name and only non-default field values included.

    Returns:
        Dict suitable for `hydra.utils.instantiate()`.
    """
    from .parameter_range import _ParameterRange

    cls = type(self)
    target = f"torchio.{cls.__qualname__}"
    cfg: dict[str, Any] = {"_target_": target}

    for name, default in _collect_init_params(cls).items():
        value = getattr(self, name, default)
        if isinstance(value, _ParameterRange):
            if value._original == default:
                continue
            value = _hydra_value(value._original)
        elif value == default:
            continue
        else:
            value = _hydra_value(value)
        cfg[name] = value
    return cfg