Coverage report: 77%

Files Functions Classes

coverage.py v7.16.2, created at 2026-10-16 22:05 +0000

File class   statements missing excluded   coverage
bbconf/__init__.py (no class)   9 0 0   100%
bbconf/bbagent.py BedBaseAgent   239 80 0   67%
bbconf/bbagent.py (no class)   51 0 0   100%
bbconf/config_parser/__init__.py (no class)   2 0 0   100%
bbconf/config_parser/bedbaseconfig.py BedBaseConfig   212 87 0   59%
bbconf/config_parser/bedbaseconfig.py (no class)   66 0 0   100%
bbconf/config_parser/const.py (no class)   20 0 0   100%
bbconf/config_parser/models.py ConfigDB   1 1 0   0%
bbconf/config_parser/models.py ConfigQdrant   0 0 0   100%
bbconf/config_parser/models.py ConfigServer   0 0 0   100%
bbconf/config_parser/models.py ConfigPath   0 0 0   100%
bbconf/config_parser/models.py AccessMethodsStruct   0 0 0   100%
bbconf/config_parser/models.py AccessMethods   0 0 0   100%
bbconf/config_parser/models.py ConfigS3   7 7 0   0%
bbconf/config_parser/models.py ConfigAnalysis   0 0 0   100%
bbconf/config_parser/models.py ConfigFile   1 1 0   0%
bbconf/config_parser/models.py (no class)   67 0 0   100%
bbconf/const.py (no class)   6 0 0   100%
bbconf/db_utils.py SchemaError   1 1 0   0%
bbconf/db_utils.py BIGSERIAL   0 0 0   100%
bbconf/db_utils.py Base   0 0 0   100%
bbconf/db_utils.py Bed   0 0 0   100%
bbconf/db_utils.py BedMetadata   0 0 0   100%
bbconf/db_utils.py BedStats   0 0 0   100%
bbconf/db_utils.py Files   0 0 0   100%
bbconf/db_utils.py BedFileBedSetRelation   0 0 0   100%
bbconf/db_utils.py BedSets   0 0 0   100%
bbconf/db_utils.py Universes   0 0 0   100%
bbconf/db_utils.py TokenizedBed   0 0 0   100%
bbconf/db_utils.py License   0 0 0   100%
bbconf/db_utils.py ReferenceGenome   0 0 0   100%
bbconf/db_utils.py GenomeRefStats   0 0 0   100%
bbconf/db_utils.py GeoGseStatus   0 0 0   100%
bbconf/db_utils.py GeoGsmStatus   0 0 0   100%
bbconf/db_utils.py UsageBedMeta   0 0 0   100%
bbconf/db_utils.py UsageBedSetMeta   0 0 0   100%
bbconf/db_utils.py UsageFiles   0 0 0   100%
bbconf/db_utils.py UsageSearch   0 0 0   100%
bbconf/db_utils.py BedSnapshot   0 0 0   100%
bbconf/db_utils.py AnalysisFile   0 0 0   100%
bbconf/db_utils.py BaseEngine   56 24 0   57%
bbconf/db_utils.py (no class)   305 7 0   98%
bbconf/exceptions.py BedBaseConfError   0 0 0   100%
bbconf/exceptions.py BedbaseS3ConnectionError   0 0 0   100%
bbconf/exceptions.py BadAccessMethodError   0 0 0   100%
bbconf/exceptions.py BedBaseConnectionError   0 0 0   100%
bbconf/exceptions.py MissingThumbnailError   0 0 0   100%
bbconf/exceptions.py BedFIleExistsError   0 0 0   100%
bbconf/exceptions.py MissingObjectError   0 0 0   100%
bbconf/exceptions.py BEDFileNotFoundError   0 0 0   100%
bbconf/exceptions.py BedSetNotFoundError   0 0 0   100%
bbconf/exceptions.py BedSetExistsError   0 0 0   100%
bbconf/exceptions.py SnapshotNotFoundError   0 0 0   100%
bbconf/exceptions.py AnalysisFileNotFoundError   0 0 0   100%
bbconf/exceptions.py UniverseNotFoundError   0 0 0   100%
bbconf/exceptions.py TokenizeFileExistsError   0 0 0   100%
bbconf/exceptions.py TokenizeFileNotExistError   0 0 0   100%
bbconf/exceptions.py QdrantInstanceNotInitializedError   0 0 0   100%
bbconf/exceptions.py BedSetTrackHubLimitError   0 0 0   100%
bbconf/exceptions.py (no class)   35 0 0   100%
bbconf/helpers.py (no class)   19 3 0   84%
bbconf/models/__init__.py (no class)   0 0 0   100%
bbconf/models/base_models.py FileModel   0 0 0   100%
bbconf/models/base_models.py StatsReturn   0 0 0   100%
bbconf/models/base_models.py UsageStats   0 0 0   100%
bbconf/models/base_models.py UsageModel   0 0 0   100%
bbconf/models/base_models.py UsageItem   0 0 0   100%
bbconf/models/base_models.py UsageResponse   0 0 0   100%
bbconf/models/base_models.py FileInfo   0 0 0   100%
bbconf/models/base_models.py AllFilesInfo   0 0 0   100%
bbconf/models/base_models.py BinValues   0 0 0   100%
bbconf/models/base_models.py GEOStatistics   0 0 0   100%
bbconf/models/base_models.py FileStats   0 0 0   100%
bbconf/models/base_models.py BedSnapshotArtifact   0 0 0   100%
bbconf/models/base_models.py BedSnapshotResult   0 0 0   100%
bbconf/models/base_models.py BedSnapshotListResult   0 0 0   100%
bbconf/models/base_models.py AnalysisFileArtifact   0 0 0   100%
bbconf/models/base_models.py AnalysisFileResult   0 0 0   100%
bbconf/models/base_models.py AnalysisFileListResult   0 0 0   100%
bbconf/models/base_models.py (no class)   116 0 0   100%
bbconf/models/bed_models.py BedPlots   0 0 0   100%
bbconf/models/bed_models.py BedFiles   0 0 0   100%
bbconf/models/bed_models.py BedClassification   0 0 0   100%
bbconf/models/bed_models.py BedStatsModel   0 0 0   100%
bbconf/models/bed_models.py StandardMeta   7 3 0   57%
bbconf/models/bed_models.py BedMetadataBasic   0 0 0   100%
bbconf/models/bed_models.py UniverseMetadata   0 0 0   100%
bbconf/models/bed_models.py BedSetMinimal   0 0 0   100%
bbconf/models/bed_models.py BedMetadataAll   0 0 0   100%
bbconf/models/bed_models.py BedListResult   0 0 0   100%
bbconf/models/bed_models.py QdrantSearchResult   0 0 0   100%
bbconf/models/bed_models.py BedListSearchResult   0 0 0   100%
bbconf/models/bed_models.py TokenizedBedResponse   0 0 0   100%
bbconf/models/bed_models.py BedEmbeddingResult   0 0 0   100%
bbconf/models/bed_models.py TokenizedPathResponse   0 0 0   100%
bbconf/models/bed_models.py RefGenValidModel   0 0 0   100%
bbconf/models/bed_models.py RefGenValidReturnModel   0 0 0   100%
bbconf/models/bed_models.py VectorMetadata   0 0 0   100%
bbconf/models/bed_models.py (no class)   149 0 0   100%
bbconf/models/bedset_models.py BedSetStats   0 0 0   100%
bbconf/models/bedset_models.py BedSetDistributions   0 0 0   100%
bbconf/models/bedset_models.py BedSetPlots   0 0 0   100%
bbconf/models/bedset_models.py BedSetMetadata   0 0 0   100%
bbconf/models/bedset_models.py BedSetListResult   0 0 0   100%
bbconf/models/bedset_models.py BedSetBedFiles   0 0 0   100%
bbconf/models/bedset_models.py BedSetPEP   1 1 0   0%
bbconf/models/bedset_models.py (no class)   57 0 0   100%
bbconf/models/drs_models.py AccessURL   0 0 0   100%
bbconf/models/drs_models.py AccessMethod   0 0 0   100%
bbconf/models/drs_models.py DRSModel   0 0 0   100%
bbconf/models/drs_models.py (no class)   20 0 0   100%
bbconf/modules/__init__.py (no class)   0 0 0   100%
bbconf/modules/analysis_files.py BedAgentAnalysisFile   84 4 0   95%
bbconf/modules/analysis_files.py (no class)   23 0 0   100%
bbconf/modules/bedfiles.py BedAgentBedFile   624 367 0   41%
bbconf/modules/bedfiles.py (no class)   79 0 0   100%
bbconf/modules/bedsets.py BedAgentBedSet   181 59 0   67%
bbconf/modules/bedsets.py (no class)   29 0 0   100%
bbconf/modules/objects.py BBObjects   38 10 0   74%
bbconf/modules/objects.py (no class)   18 0 0   100%
bbconf/modules/snapshots.py BedAgentSnapshot   65 63 0   3%
bbconf/modules/snapshots.py (no class)   22 0 0   100%
tests/__init__.py (no class)   0 0 0   100%
tests/conftest.py (no class)   28 2 0   93%
tests/test_analysis_files.py Test_AnalysisFile_Agent   52 0 0   100%
tests/test_analysis_files.py (no class)   19 0 0   100%
tests/test_bedfile.py Test_BedFile_Agent   148 0 0   100%
tests/test_bedfile.py TestVectorSearch   20 20 0   0%
tests/test_bedfile.py (no class)   80 13 0   84%
tests/test_bedset.py TestBedset   102 0 0   100%
tests/test_bedset.py (no class)   28 0 0   100%
tests/test_common.py TestAccessMethodsMissing   6 0 0   100%
tests/test_common.py TestAddUsage   19 0 0   100%
tests/test_common.py (no class)   40 0 0   100%
tests/test_db_engine.py test_connect_args_reach_the_driver._Stop   0 0 0   100%
tests/test_db_engine.py (no class)   39 0 0   100%
tests/test_objects.py TestObjects   15 0 0   100%
tests/test_objects.py (no class)   17 4 0   76%
tests/test_universes.py TestUniverses   24 0 1   100%
tests/test_universes.py (no class)   11 0 0   100%
tests/utils.py ContextManagerDBTesting   36 6 0   83%
tests/utils.py (no class)   23 0 0   100%
Total     3317 763 1   77%

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