| bbconf/__init__.py |
(no function) |
8 |
0 |
0 |
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| bbconf/_version.py |
(no function) |
1 |
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0 |
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| bbconf/bbagent.py |
BedBaseAgent.__init__ |
4 |
4 |
0 |
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| bbconf/bbagent.py |
BedBaseAgent.bed |
1 |
1 |
0 |
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| bbconf/bbagent.py |
BedBaseAgent.bedset |
1 |
1 |
0 |
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| bbconf/bbagent.py |
BedBaseAgent.objects |
1 |
1 |
0 |
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| bbconf/bbagent.py |
BedBaseAgent.get_stats |
5 |
5 |
0 |
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| bbconf/bbagent.py |
BedBaseAgent.list_of_licenses |
4 |
4 |
0 |
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| bbconf/bbagent.py |
(no function) |
23 |
0 |
0 |
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| bbconf/config_parser/__init__.py |
(no function) |
2 |
0 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.__init__ |
9 |
9 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._read_config_file |
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BedBaseConfig.config |
1 |
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BedBaseConfig.db_engine |
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BedBaseConfig.t2bsi |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.b2bsi |
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BedBaseConfig.r2v |
1 |
1 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.qdrant_engine |
1 |
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BedBaseConfig.phc |
1 |
1 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.boto3_client |
1 |
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BedBaseConfig.zarr_root |
10 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_db_engine |
1 |
1 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_qdrant_backend |
5 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_t2bsi_object |
6 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_b2bsi_object |
6 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_pephubclient |
6 |
6 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_boto3_client |
6 |
6 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig._init_r2v_object |
1 |
1 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.upload_s3 |
7 |
7 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.upload_files_s3 |
24 |
24 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.delete_s3 |
8 |
8 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.delete_files_s3 |
5 |
5 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.get_prefixed_uri |
6 |
6 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
BedBaseConfig.construct_access_method_list |
5 |
5 |
0 |
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| bbconf/config_parser/bedbaseconfig.py |
(no function) |
63 |
0 |
0 |
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| bbconf/config_parser/const.py |
(no function) |
20 |
0 |
0 |
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| bbconf/config_parser/models.py |
ConfigDB.url |
1 |
1 |
0 |
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| bbconf/config_parser/models.py |
ConfigS3.validate_aws_credentials |
3 |
3 |
0 |
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| bbconf/config_parser/models.py |
ConfigS3.modify_access |
4 |
4 |
0 |
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| bbconf/config_parser/models.py |
ConfigFile.from_yaml |
1 |
1 |
0 |
0% |
| bbconf/config_parser/models.py |
(no function) |
64 |
0 |
0 |
100% |
| bbconf/const.py |
(no function) |
5 |
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0 |
100% |
| bbconf/db_utils.py |
SchemaError.__init__ |
1 |
1 |
0 |
0% |
| bbconf/db_utils.py |
compile_bigserial_pg |
1 |
1 |
0 |
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| bbconf/db_utils.py |
compile_jsonb_pg |
1 |
1 |
0 |
0% |
| bbconf/db_utils.py |
receive_after_create |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
deliver_update_date |
1 |
1 |
0 |
0% |
| bbconf/db_utils.py |
add_bed_universe |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
delete_bed_universe |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.__init__ |
5 |
5 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.create_schema |
8 |
8 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.delete_schema |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.session_execute |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.session |
1 |
1 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.engine |
1 |
1 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine._start_session |
6 |
6 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.check_db_connection |
4 |
4 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine.create_schema_graph |
3 |
3 |
0 |
0% |
| bbconf/db_utils.py |
BaseEngine._upload_licenses |
6 |
6 |
0 |
0% |
| bbconf/db_utils.py |
(no function) |
146 |
0 |
0 |
100% |
| bbconf/exceptions.py |
(no function) |
29 |
0 |
0 |
100% |
| bbconf/helpers.py |
get_bedbase_cfg |
4 |
4 |
0 |
0% |
| bbconf/helpers.py |
get_absolute_path |
3 |
3 |
0 |
0% |
| bbconf/helpers.py |
(no function) |
8 |
0 |
0 |
100% |
| bbconf/models/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| bbconf/models/base_models.py |
(no function) |
17 |
0 |
0 |
100% |
| bbconf/models/bed_models.py |
(no function) |
116 |
0 |
0 |
100% |
| bbconf/models/bedset_models.py |
(no function) |
26 |
0 |
0 |
100% |
| bbconf/models/drs_models.py |
(no function) |
21 |
0 |
0 |
100% |
| bbconf/modules/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.__init__ |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get |
34 |
34 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_stats |
7 |
7 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_plots |
10 |
10 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_files |
10 |
10 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_raw_metadata |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_classification |
7 |
7 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_objects |
9 |
9 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_embedding |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_ids_list |
16 |
16 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.add |
52 |
52 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.update |
30 |
30 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.delete |
16 |
16 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.upload_pephub |
4 |
4 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.update_pephub |
4 |
4 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.delete_pephub_sample |
4 |
4 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.upload_file_qdrant |
14 |
14 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.text_to_bed_search |
14 |
14 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.bed_to_bed_search |
12 |
12 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.reindex_qdrant |
17 |
17 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.delete_qdrant_point |
2 |
2 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.create_qdrant_collection |
1 |
1 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.exists |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.exists_universe |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.add_universe |
8 |
8 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.delete_universe |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.add_tokenized |
14 |
14 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile._add_zarr_s3 |
9 |
9 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_tokenized |
4 |
4 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.delete_tokenized |
9 |
9 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile._get_tokenized_path |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.exist_tokenized |
6 |
6 |
0 |
0% |
| bbconf/modules/bedfiles.py |
BedAgentBedFile.get_tokenized_link |
2 |
2 |
0 |
0% |
| bbconf/modules/bedfiles.py |
(no function) |
53 |
0 |
0 |
100% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.__init__ |
2 |
2 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get |
15 |
15 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get_plots |
10 |
10 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get_objects |
9 |
9 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get_statistics |
6 |
6 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.create |
38 |
38 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet._calculate_statistics |
13 |
13 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet._create_pephub_view |
8 |
8 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get_ids_list |
13 |
13 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.get_bedset_bedfiles |
6 |
6 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.delete |
12 |
12 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.delete_phc_view |
8 |
8 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.exists |
6 |
6 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.add_bedfile |
1 |
1 |
0 |
0% |
| bbconf/modules/bedsets.py |
BedAgentBedSet.delete_bedfile |
1 |
1 |
0 |
0% |
| bbconf/modules/bedsets.py |
(no function) |
28 |
0 |
0 |
100% |
| bbconf/modules/objects.py |
BBObjects.__init__ |
3 |
3 |
0 |
0% |
| bbconf/modules/objects.py |
BBObjects.get_thumbnail_uri |
5 |
5 |
0 |
0% |
| bbconf/modules/objects.py |
BBObjects.get_object_uri |
2 |
2 |
0 |
0% |
| bbconf/modules/objects.py |
BBObjects._get_result |
16 |
16 |
0 |
0% |
| bbconf/modules/objects.py |
BBObjects.get_drs_metadata |
9 |
9 |
0 |
0% |
| bbconf/modules/objects.py |
BBObjects.construct_drs_metadata |
3 |
3 |
0 |
0% |
| bbconf/modules/objects.py |
(no function) |
18 |
0 |
0 |
100% |
| tests/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| tests/conftest.py |
get_bbagent |
1 |
1 |
0 |
0% |
| tests/conftest.py |
bbagent_obj |
1 |
1 |
0 |
0% |
| tests/conftest.py |
example_bedset_plot |
1 |
1 |
0 |
0% |
| tests/conftest.py |
example_dict |
4 |
4 |
0 |
0% |
| tests/conftest.py |
load_test_data |
1 |
1 |
0 |
0% |
| tests/conftest.py |
mocked_phc |
1 |
1 |
0 |
0% |
| tests/conftest.py |
(no function) |
29 |
2 |
0 |
93% |
| tests/test_bedfile.py |
test_bb_database |
2 |
2 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_upload |
5 |
5 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_upload_exists |
5 |
5 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_add_nofail |
6 |
6 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_all |
11 |
11 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_all_not_found |
9 |
9 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_raw_metadata |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_stats |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_files |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_plots |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_objects |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_classification |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list |
7 |
7 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list_genome_true |
7 |
7 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list_genome_false |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list_bed_type_true |
7 |
7 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list_bed_type_false |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_get_list_bed_offset |
5 |
5 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_bed_delete |
9 |
9 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_bed_delete_not_found |
3 |
3 |
0 |
0% |
| tests/test_bedfile.py |
Test_BedFile_Agent.test_bed_update |
1 |
1 |
0 |
0% |
| tests/test_bedfile.py |
TestVectorSearch.test_qdrant_search |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
TestVectorSearch.test_delete_qdrant_point |
2 |
2 |
0 |
0% |
| tests/test_bedfile.py |
TestVectorSearch.test_create_qdrant_collection |
4 |
4 |
0 |
0% |
| tests/test_bedfile.py |
(no function) |
39 |
0 |
0 |
100% |
| tests/test_bedset.py |
TestBedset.test_calculate_stats |
5 |
5 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_crate_bedset_all |
8 |
8 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_metadata_full |
7 |
7 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_metadata_not_full |
6 |
6 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_not_found |
3 |
3 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_object |
3 |
3 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_plots |
3 |
3 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_stats |
4 |
4 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_bedset_list |
7 |
7 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_bedset_list_offset |
5 |
5 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_idset_list_query_found |
6 |
6 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_idset_list_query_fail |
6 |
6 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_get_get_bedset_bedfiles |
4 |
4 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_delete |
4 |
4 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_delete_none |
5 |
5 |
0 |
0% |
| tests/test_bedset.py |
TestBedset.test_delete_s3_error |
3 |
3 |
0 |
0% |
| tests/test_bedset.py |
(no function) |
26 |
0 |
0 |
100% |
| tests/test_common.py |
test_get_stats |
6 |
6 |
0 |
0% |
| tests/test_common.py |
test_get_licenses |
3 |
3 |
0 |
0% |
| tests/test_common.py |
(no function) |
8 |
0 |
0 |
100% |
| tests/test_objects.py |
TestObjects.test_object_path |
3 |
3 |
0 |
0% |
| tests/test_objects.py |
TestObjects.test_object_path_error |
3 |
3 |
0 |
0% |
| tests/test_objects.py |
TestObjects.test_object_path_thumbnail |
3 |
3 |
0 |
0% |
| tests/test_objects.py |
TestObjects.test_object_path_thumbnail_error |
3 |
3 |
0 |
0% |
| tests/test_objects.py |
TestObjects.test_object_metadata |
3 |
3 |
0 |
0% |
| tests/test_objects.py |
test_create_schema_graph |
4 |
4 |
0 |
0% |
| tests/test_objects.py |
(no function) |
13 |
0 |
0 |
100% |
| tests/test_universes.py |
TestUniverses.test_add |
7 |
7 |
0 |
0% |
| tests/test_universes.py |
TestUniverses.test_delete_universe |
5 |
5 |
0 |
0% |
| tests/test_universes.py |
TestUniverses.test_add_universe_error |
3 |
3 |
0 |
0% |
| tests/test_universes.py |
TestUniverses.test_add_get_tokenized |
9 |
9 |
0 |
0% |
| tests/test_universes.py |
TestUniverses.test_get_tokenized |
1 |
1 |
0 |
0% |
| tests/test_universes.py |
(no function) |
11 |
0 |
0 |
100% |
| tests/utils.py |
get_example_dict |
2 |
2 |
0 |
0% |
| tests/utils.py |
get_bedset_files |
1 |
1 |
0 |
0% |
| tests/utils.py |
get_files |
1 |
1 |
0 |
0% |
| tests/utils.py |
get_plots |
1 |
1 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting.__init__ |
7 |
7 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting.__enter__ |
4 |
4 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting.__exit__ |
1 |
1 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting._add_data |
10 |
10 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting._add_bedset_data |
8 |
8 |
0 |
0% |
| tests/utils.py |
ContextManagerDBTesting._add_universe |
5 |
5 |
0 |
0% |
| tests/utils.py |
(no function) |
18 |
0 |
0 |
100% |